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## Inline text formatting To make text **bold** use `**double asterisks**` or `__double underscores__`. To make text *italic* use `*asterisks*` or `_underscores_`. To make text ^superscript^ use `^caret^`. To make text ~subscript~ use `~tilde~`. To mark text as `inline code` use `` `backticks` ``. To ~~strikethrough~~ text use `~~double tilde~~`. ## Line breaks To create a line break, put more than 2 spaces at the end of a sentence. ```{exercise-start} Markdown in Jupyter Notebook :label: markdown1 ``` **Level:** {octicon}`star-fill;1em;sd-text-warning` {octicon}`star-fill;1em;sd-text-warning` {octicon}`star;1em;sd-text-warning` Replicate the output of the text below in a new Jupyter Notebook `notebook2`.  The text comes from [a paper by Monya Baker](https://www.nature.com/news/1-500-scientists-lift-the-lid-on-reproducibility-1.19970) that was published in 2016 in the Nature journal that triggered the discussion about Reproducibility Crisis. ```{exercise-end} ``` ```{solution-start} markdown1 :label: markdown1-solution :class: dropdown ``` ``` # 1,500 scientists lift the lid on reproducibility ## Survey sheds light on the 'crisis' rocking research. ### by Mona Baker **More than 70% of researchers have tried and failed to reproduce another scientist's experiments**, and more than half have failed to reproduce their own experiments. Those are some of the telling figures that emerged from *Nature*'s survey of 1,576 researchers who took a brief online questionnaire on reproducibility in research. The data reveal sometimes-contradictory attitudes towards reproducibility. Although 52% of those surveyed agree that there is a significant crisis of reproducibility, less than 31% think that failure to reproduce published results means that the result is probably wrong, and most say that they still trust the published literature. ``` ```{solution-end} ``` ## Links ### Linking text to Headers To link text to a header, use `[link to header](#section-title)`. Inside the parenthesis, write the title text in lower-case letters and replace spaces with a hyphen, for example, `[link to header](#text-cells)` will be rendered as [link to header](#text-cells). ### Linking text to a webpage To create a link to a webpage use `[text of link](https://jupyter.org/)`. This is rendered as [text of link](https://jupyter.org/). ## Footnotes To indicate a footnote use`[^2]`. Indicate additional footnotes using other numbers as follows `[^3]`, then specify the wordings of the footnotes as: `[^2]: This is the first footnote.` `[^3]: This is the second footnote.` You do not need to put footnotes at the end of the document for them to be rendered there. This example is rendered as follows: To indicate a footnote use[^2]. Indicate additional footnotes using other numbers as follows[^3], then specify the wordings of the footnotes as: [^2]: This is the first footnote. [^3]: This is the second footnote. ## Lists ### Ordered lists To create an ordered list use the following syntax: ``` 1. Item 1 2. Item 2 3. Item 3 ``` This is rendered as: 1. Item 1 2. Item 2 3. Item 3 Use 4 spaces to indent an item if you would like to have sub-lists: ``` 1. Item 1 2. Item 2 3. Item 3 a. Item 3a b. Item 3b c. Item 3c 4. Item 4 ``` 1. Item 1 2. Item 2 3. Item 3 a. Item 3a b. Item 3b c. Item 3c 4. Item 4 ### Unordered lists In an unordered bulletted list, each item begins with `*`, `+` or `-`. Example: ``` * Item 1 * Item 2 * Item 3 * Item 3a * Item 3ai * Item 3aii * Item 3b * Item 3c * Item 4 ``` Will be rendered as: * Item 1 * Item 2 * Item 3 * Item 3a * Item 3ai * Item 3aii * Item 3b * Item 3c * Item 4 ## Inserting images To insert an image use the following syntax: ``. Example: `` Will be rendered as:  ```{exercise-start} More Markdown :label: markdown2 ``` **Level:** {octicon}`star-fill;1em;sd-text-warning` {octicon}`star-fill;1em;sd-text-warning` {octicon}`star;1em;sd-text-warning` Continue working on `notebook2.ipynb` from {numref}`markdown1`. Extend the output of `notebook2.ipynb` to look like [this](https://github.com/ac812/reproducible-research-python/blob/main/docs/notebook-solutions/notebook2.ipynb). You can find the image used in this exercise at this location: https://www.nature.com/news/polopoly_fs/7.36716.1469695923!/image/reproducibility-graphic-online1.jpeg_gen/derivatives/landscape_630/reproducibility-graphic-online1.jpeg ```{exercise-end} ``` More information about Markdown is provided [here](https://colab.research.google.com/notebooks/markdown_guide.ipynb). Let us now look at code cells.